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Scanpy — Vecura

Scanpy

Scanpy is a scalable Python toolkit for analyzing single-cell gene expression data, built jointly with anndata.

Job Name

AnnData File (.h5ad)*

Embedding Method*

Clustering Method*

Resolution

Neighbors (k-NN)

PCs for Neighbors

Min Genes / Cell

Min Cells / Gene

Max % Mitochondrial

%

Run Scrublet

Detect and flag doublet cells

Scale Clip Value

Root Cell Group

Diffusion Components

Random Seed

Configure input settings on the left, then click "Run"