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NA-MPNN — Vecura

NA-MPNN

NA-MPNN is a message-passing neural network from the Baker Lab for nucleic-acid + protein sequence design and protein-DNA binding specificity prediction.

Job Name

PDB File*

Chains to Design (NA)

Residue Selection Mode*

Design Nucleic Acid Only

Restrict design to NA chains only

Parse Nucleic Acid Only

Parse only NA chains from PDB

Omit Tokens (omit_AA)

Number of Batches

Bias AA

Pair Bias AA

Symmetry Residues

Symmetry Weights

Parse These Chains Only

NA Shared Tokens

Share RNA/DNA token vocabulary

Seed

Batch Size

Temperature

K Neighbors

Zero Indexed

Start PDB output numbering at 0

Save Stats

Save per-position output statistics

Catch Failed Inferences

Catch inference exceptions gracefully

Load Residues with Missing Atoms

Allow residues with incomplete atom records

File Ending

Configure input settings on the left, then click "Run"