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fgsea — Vecura
fgsea
Run gene-set enrichment analysis on transcriptomics data — supports pre-ranked GSEA, over-representation analysis, and contrast-free co-regulation scoring.
Add gene symbols with their ranking statistics (e.g. log2 fold change, t-statistic). Positive = upregulated, negative = downregulated.
Two-column file: gene symbol + numeric score. Comma, tab, or space delimited.
BRCA1 2.1
TP53 -1.8
MYC 3.2
Add a pathway name, then type gene symbols into it. Each pathway is a named gene set. Alternatively, upload a GMT file.
GMT (Gene Matrix Transposed) format — tab-separated, one pathway per line:
DNA_REPAIR na BRCA1 ATM TP53
ONCOGENES na MYC KRAS